Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, May 3 2024

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Submission

23415 : id:23414:1-33,374-638

Your submitted sequence: sequence (298 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 30 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.7	-0.540E+01	0.023	0.027	0.042	1AM9_A	4.10.280.10.3.1
2	ffas.5	-0.728E+01	0.082	0.132	0.332	1AQI_A	3.40.50.150.19.1 3.90.220.10.1.1
3	ffas.8	-0.532E+01	0.026	0.033	0.062	1V85_A	N/A
4	ffas.4	-0.384E+02	0.138	0.187	0.385	1YDX_A	N/A
5	pgenthreader.3	45.215	0.128	0.152	0.248	1YDX_A	N/A
6	rpsblast.5	8e-09	0.082	0.104	0.193	1YDX_A	N/A
7	rpsblast.7	1e-04	0.094	0.115	0.199	1YDX_A	N/A
8	ffas.3	-0.486E+02	0.160	0.221	0.463	1YF2_A	N/A
9	pgenthreader.1	72.919	0.175	0.221	0.404	1YF2_A	N/A
10	rpsblast.2	2e-10	0.121	0.153	0.283	1YF2_B	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.