Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Thursday, April 18 2024

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Submission

23495 : SP|P62314|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 OS=HOMO SAPIENS OX=9606 GN=SNRPD1 PE=1 SV=1

Your submitted sequence: sequence (119 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

PCONS (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.1	-0.630E+02	0.481	0.477	0.460	1B34_A	2.30.30.100.10.1
2	ffas.4	-0.435E+02	0.473	0.467	0.441	1D3B_A	2.30.30.100.4.1
3	ffas.2	-0.545E+02	0.468	0.467	0.461	2Y9A_D	N/A
4	pgenthreader.4	55.602	0.469	0.464	0.446	1D3B_A	2.30.30.100.4.1
5	rpsblast.1	7e-33	0.449	0.460	0.502	4F7U_A	N/A
6	rpsblast.6	1e-23	0.462	0.458	0.441	4C92_D	N/A
7	pgenthreader.2	57.706	0.448	0.451	0.461	4M75_G	N/A
8	pgenthreader.6	49.928	0.456	0.449	0.420	2Y9A_F	N/A
9	rpsblast.8	1e-22	0.460	0.449	0.403	1D3B_A	2.30.30.100.4.1
10	pgenthreader.5	52.606	0.465	0.447	0.374	2Y9A_D	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.