Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Saturday, May 10 2025

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Submission

23495 : SP|P62314|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 OS=HOMO SAPIENS OX=9606 GN=SNRPD1 PE=1 SV=1

Your submitted sequence: sequence (119 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

rpsblast

Rank	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	7e-33	0.449	0.460	0.502	4F7U_A	N/A
2	2e-30	0.426	0.417	0.379	4M7D_B	N/A
3	5e-27	0.428	0.444	0.506	1M5Q_I	2.30.30.100.5.1 3.30.310.60.1.1
4	6e-27	0.421	0.417	0.401	4C92_B	N/A
5	1e-24	0.459	0.442	0.376	4F7U_F	N/A
6	1e-23	0.462	0.458	0.441	4C92_D	N/A
7	6e-23	0.384	0.377	0.347	4EMH_U	N/A
8	1e-22	0.460	0.449	0.403	1D3B_A	2.30.30.100.4.1
9	2e-21	0.447	0.433	0.376	4M7D_N	N/A

References

Marchler-Bauer A et al (2002) "CDD: a database of conserved domain alignments with links to domain three-dimensional structure." Nucleic Acids Res 30(1), 281-283. [LINK]