Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Tuesday, April 16 2024

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Submission

23562 : samira-2

Your submitted sequence: sequence (381 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2
Queued at server: sam-t02 fugue

PCONS (only used 30 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	rpsblast.1	7e-62	0.177	0.179	0.189	3CHB_G	2.40.50.110.1.1
2	rpsblast.2	2e-60	0.177	0.177	0.176	4L63_E	N/A
3	rpsblast.3	1e-59	0.177	0.176	0.174	1DJR_D	2.40.50.110.1.1
4	rpsblast.4	4e-59	0.155	0.158	0.168	2WV6_J	N/A
5	pgenthreader.2	97.684	0.150	0.156	0.182	1DJR_D	2.40.50.110.1.1
6	pgenthreader.1	102.279	0.150	0.156	0.178	3CHB_D	2.40.50.110.1.1
7	pgenthreader.3	96.743	0.148	0.155	0.184	4L63_B	N/A
8	pgenthreader.4	95.089	0.150	0.151	0.156	1LTR_F	2.40.50.110.1.1
9	ffas.2	-0.795E+02	0.135	0.145	0.184	2CHB_D	2.40.50.110.1.1
10	ffas.4	-0.792E+02	0.135	0.144	0.182	1DJR_D	2.40.50.110.1.1

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.