Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Tuesday, May 7 2024

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Submission

23611 : NP_001863.3 CARBOXYPEPTIDASE B2 ISOFORM 1 PREPROPROTEIN [HOMO SAPIENS]

Your submitted sequence: sequence (423 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2
Queued at server: sam-t02 fugue lomets

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.11	-0.105E+03	0.631	0.633	0.641	1ARM_A	N/A
2	ffas.9	-0.106E+03	0.684	0.689	0.709	1AYE_A	N/A
3	pgenthreader.5	169.837	0.634	0.648	0.702	1AYE_A	N/A
4	ffas.10	-0.105E+03	0.623	0.621	0.611	1BAV_A	N/A
5	ffas.13	-0.948E+02	0.361	0.317	0.141	1CPB_B	N/A
6	rpsblast.7	5e-64	0.565	0.573	0.605	1DTD_A	N/A
7	ffas.20	-0.595E+02	0.391	0.418	0.524	1H8L_A	3.40.630.10.13.1 2.60.40.1120.1.1
8	ffas.8	-0.107E+03	0.559	0.584	0.682	1JQG_A	N/A
9	rpsblast.1	2e-73	0.515	0.546	0.669	1JQG_A	N/A
10	ffas.5	-0.108E+03	0.684	0.692	0.726	1KWM_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.